James J. Davis

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

Ross Overbeek, Robert Olson, Gordon D. Pusch et al. · Nucleic Acids Research · 2013 · 4.5K citations · Full text

Engineering, Genetics, Genomics +25

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

Thomas Brettin, James J. Davis, Terry Disz et al. · Scientific Reports · 2015 · 2.8K citations · Full text

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

Alice R. Wattam, James J. Davis, Rida Assaf et al. · Nucleic Acids Research · 2016 · 1.6K citations · Full text

Engineering, Genetics, Genomics +18

KBase: The United States Department of Energy Systems Biology Knowledgebase

Adam P. Arkin, Robert W. Cottingham, Christopher S. Henry et al. · Nature Biotechnology · 2018 · 1.6K citations · Full text

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

Robert Olson, Rida Assaf, Thomas Brettin et al. · Nucleic Acids Research · 2022 · 1.1K citations · Full text