James J. Davis

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

Ross Overbeek, Robert Olson, Gordon D. Pusch et al. · Nucleic Acids Research · 2013 · 4.6K citations · Full text

Life Sciences, Bioinformatics, Genetics +16

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

Thomas Brettin, James J. Davis, Terry Disz et al. · Scientific Reports · 2015 · 2.9K citations · Full text

Life Sciences, Bioinformatics, Microbiology +13

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

Alice R. Wattam, James J. Davis, Rida Assaf et al. · Nucleic Acids Research · 2016 · 1.7K citations · Full text

Life Sciences, Bioinformatics, Microbiology +13

KBase: The United States Department of Energy Systems Biology Knowledgebase

Adam P. Arkin, Robert W. Cottingham, Christopher S. Henry et al. · Nature Biotechnology · 2018 · 1.7K citations · Full text

Life Sciences, Biology, Systems Biology +9

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

Robert Olson, Rida Assaf, Thomas Brettin et al. · Nucleic Acids Research · 2022 · 1.2K citations · Full text

Life Sciences, Bioinformatics, Biomedical Informatics +15