The immune cell atlas of human neuroblastoma

Bronte Manouk Verhoeven, Shenglin Mei, Thale Kristin Olsen, +10

Cell Reports Medicine

Four evolutionary trajectories underlie genetic intratumoral variation in childhood cancer

Jenny Karlsson, Anders Valind, Linda Holmquist Mengelbier, +17

Nature Genetics

Somatic VariantMalignant DiseaseTumor HeterogeneityMedicineGenetics +7

Intratumoral genome diversity parallels progression and predicts outcome in pediatric cancer

Linda Holmquist Mengelbier, Jenny Karlsson, David Lindgren, +20

Nature Communications

<scp><i>BCOR</i></scp> internal tandem duplication and <scp><i>YWHAE–NUTM2B/E</i></scp> fusion are mutually exclusive events in clear cell sarcoma of the kidney

Jenny Karlsson, Anders Valind, David Gisselsson

Genes Chromosomes and Cancer

Extensive Clonal Branching Shapes the Evolutionary History of High-Risk Pediatric Cancers

Natalie Andersson, Björn Bakker, Jenny Karlsson, +5

Cancer Research

Activation of human telomerase reverse transcriptase through gene fusion in clear cell sarcoma of the kidney

Jenny Karlsson, Henrik Lilljebjörn, Linda Holmquist Mengelbier, +5

Cancer Letters

Gene FusionSystems BiologyClear Cell SarcomaGene ExpressionMedicine +2

Whole chromosome gain does not in itself confer cancer-like chromosomal instability

Anders Valind, Yuesheng Jin, Bo Baldetorp, +1

Proceedings of the National Academy of Sciences

Elevated Tolerance to Aneuploidy in Cancer Cells: Estimating the Fitness Effects of Chromosome Number Alterations by In Silico Modelling of Somatic Genome Evolution

Anders Valind, Yuesheng Jin, David Gisselsson

PLoS ONE

CytogeneticsGeneticsGenomicsEpigeneticsTumor Biology +21

Aberrant epigenetic regulation in clear cell sarcoma of the kidney featuring distinct DNA hypermethylation and EZH2 overexpression

Jenny Karlsson, Anders Valind, Caroline Jansson, +3

Oncotarget

ChromatinDevelopmental BiologyMedicineGeneticsEpigenetic Change +13

DEVOLUTION—A method for phylogenetic reconstruction of aneuploid cancers based on multiregional genotyping data

Natalie Andersson, Subhayan Chattopadhyay, Anders Valind, +2

Communications Biology