Jacqueline A. Keane

Roary: rapid large-scale prokaryote pan genome analysis

Andrew J. Page, Carla Cummins, Martin Hunt et al. · Bioinformatics · 2015 · 5.6K citations · Full text

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Nicholas J. Croucher, Andrew J. Page, Thomas R. Connor et al. · Nucleic Acids Research · 2014 · 2.7K citations · Full text

Large Samples, Comparative Genomics, Genetics +17

SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

Andrew J. Page, Ben Taylor, Aidan Delaney et al. · Microbial Genomics · 2016 · 1.2K citations · Full text

Circlator: automated circularization of genome assemblies using long sequencing reads

Martin Hunt, Nishadi De Silva, Thomas D. Otto et al. · Genome biology · 2015 · 1.1K citations · Full text

Dna, Genetics, Oxford Nanopore Data +23

The genomes of four tapeworm species reveal adaptations to parasitism

Isheng Jason Tsai, Magdalena Zarowiecki, Nancy Holroyd et al. · Nature · 2013 · 781 citations · Full text