Stephanie W. Lo

Producing polished prokaryotic pangenomes with the Panaroo pipeline

Gerry Tonkin‐Hill, Neil MacAlasdair, Christopher Ruis et al. · Genome biology · 2020 · 1.2K citations · Full text

SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

Brian J. Willett, Joe Grove, Oscar A. MacLean et al. · Nature Microbiology · 2022 · 701 citations · Full text

Fast and flexible bacterial genomic epidemiology with PopPUNK

John A. Lees, Simon R. Harris, Gerry Tonkin‐Hill et al. · Genome Research · 2019 · 471 citations · Full text

Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7

Bo Meng, Steven A. Kemp, Guido Papa et al. · Cell Reports · 2021 · 446 citations · Full text

A New Pneumococcal Capsule Type, 10D, is the 100th Serotype and Has a Large <i>cps</i> Fragment from an Oral Streptococcus

Feroze Ganaie, Jamil S. Saad, Lesley McGee et al. · mBio · 2020 · 387 citations · Full text