Ciara H. O’Flanagan

Probabilistic cell-type assignment of single-cell RNA-seq for tumor microenvironment profiling

Allen W. Zhang, Ciara H. O’Flanagan, Elizabeth A. Chavez et al. · Nature Methods · 2019 · 427 citations · Full text

Life Sciences, Bioinformatics, Cell Biology +16

Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems

Shahar Alon, Daniel Goodwin, Anubhav Sinha et al. · Science · 2021 · 419 citations · Full text

Life Sciences, Molecular Biology, Neuroscience +14

Imaging mass cytometry and multiplatform genomics define the phenogenomic landscape of breast cancer

H. Raza Ali, Hartland W. Jackson, Vito Riccardo Tomaso Zanotelli et al. · Nature Cancer · 2020 · 332 citations · Full text

Medicine, Molecular Biology, Oncology +17

Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing

Emma Laks, Andrew McPherson, Hans Zahn et al. · Cell · 2019 · 303 citations · Full text

Life Sciences, Genetics, Oncology +16

Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses

Ciara H. O’Flanagan, Kieran R. Campbell, Allen W. Zhang et al. · Genome biology · 2019 · 286 citations · Full text

Life Sciences, Cancer Biology, Molecular Biology +15