CHARMM-GUI Polymer Builder for Modeling and Simulation of Synthetic Polymers

Yeol Kyo Choi, Sang‐Jun Park, Soohyung Park, +4

Journal of Chemical Theory and Computation

CHARMM-GUI HMMM Builder for Membrane Simulations with the Highly Mobile Membrane-Mimetic Model

Yifei Qi, Xi Cheng, Jumin Lee, +6

Biophysical Journal

Membrane StructureMembrane FormationEngineeringMembrane ComputingNumerical Simulation +9

CHARMM-GUI Membrane Builder for Lipid Nanoparticles with Ionizable Cationic Lipids and PEGylated Lipids

Soohyung Park, Yeol Kyo Choi, Seonghoon Kim, +2

Journal of Chemical Information and Modeling

Bilayer Properties of Lipid A from Various Gram-Negative Bacteria

Seonghoon Kim, Dhilon S. Patel, Soohyung Park, +4

Biophysical Journal

Proteinlipid InteractionGram-negative BacteriologyLipid BiophysicsBiochemistryMicrobiology +4

Comparative Molecular Dynamics Simulation Studies of Realistic Eukaryotic, Prokaryotic, and Archaeal Membranes

Irina D. Pogozheva, Grant Armstrong, Lingyang Kong, +9

Journal of Chemical Information and Modeling

Membrane StructureBiophysical ModelingEngineeringMolecular BiologyComputational Chemistry +15

Distance-Dependent Proton Transfer along Water Wires Connecting Acid−Base Pairs

M. Jocelyn Cox, R. L. A. Timmer, Huib J. Bakker, +2

The Journal of Physical Chemistry A

EngineeringPhotochemistryNatural SciencesMechanistic PhotochemistryProton-coupled Electron Transfer +13

How Tolerant are Membrane Simulations with Mismatch in Area per Lipid between Leaflets?

Soohyung Park, Andrew H. Beaven, Jeffery B. Klauda, +1

Journal of Chemical Theory and Computation

Transmembrane Helix Assembly by Window Exchange Umbrella Sampling

Soohyung Park, Taehoon Kim, Wonpil Im

Physical Review Letters

Membrane StructureEngineeringProtein AssemblyProtein FoldingMolecular Self-assembly +11

Transmembrane features governing Fc receptor CD16A assembly with CD16A signaling adaptor molecules

Alfonso Blázquez-Moreno, Soohyung Park, Wonpil Im, +3

Proceedings of the National Academy of Sciences

Influence of Ganglioside GM1 Concentration on Lipid Clustering and Membrane Properties and Curvature

Dhilon S. Patel, Soohyung Park, Emilia L. Wu, +4

Biophysical Journal

Lipid BiophysicsGanglioside Gm1 ConcentrationBiochemistryLipid ClusteringGlycobiology +6