Zhengqiao Zhao

Critical Assessment of Metagenome Interpretation: the second round of challenges

Fernando Meyer, Adrian Fritz, Zhi-Luo Deng et al. · Nature Methods · 2022 · 366 citations · Full text

16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses

Stephen Woloszynek, Zhengqiao Zhao, Jian Chen et al. · PLoS Computational Biology · 2019 · 52 citations · Full text

Genetic grouping of SARS-CoV-2 coronavirus sequences using informative subtype markers for pandemic spread visualization

Zhengqiao Zhao, Bahrad A. Sokhansanj, Charvi Malhotra et al. · PLoS Computational Biology · 2020 · 50 citations · Full text

Engineering, Virus Epidemiology, Viral Diagnostics +21

Amino Acid k-mer Feature Extraction for Quantitative Antimicrobial Resistance (AMR) Prediction by Machine Learning and Model Interpretation for Biological Insights

Taha ValizadehAslani, Zhengqiao Zhao, Bahrad A. Sokhansanj et al. · Biology · 2020 · 39 citations · Full text

Exploring thematic structure and predicted functionality of 16S rRNA amplicon data

Stephen Woloszynek, Joshua Chang Mell, Zhengqiao Zhao et al. · PLoS ONE · 2019 · 25 citations · Full text