Concepedia
Statistics
Publications
9
Citations
644
H-Index
Active since
2016
Affiliations
Masaryk University(Current)
St. Anne's University Hospital Brno
Czech Academy of Sciences, Institute of Computer Science
University Hospital Brno
RECETOX
Ondřej Vávra is an author at Masaryk University specializing in life sciences, structural biology, and structural bioinformatics.
Publications per year
2016–2025
Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport
Jan Štourač, Ondřej Vávra, Piia Kokkonen et al. · Nucleic Acids Research · 2019 · 278 citations · Full text
Life Sciences, Biochemistry, Bioinformatics +14
HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering
Jaroslav Bendl, Jan Štourač, Eva Šebestová et al. · Nucleic Acids Research · 2016 · 99 citations · Full text
Engineering, Biochemistry, Bioengineering +17
CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels
Ondřej Vávra, Jiří Filipovič, Jan Plhák et al. · Bioinformatics · 2019 · 88 citations · Full text
Life Sciences, Biophysics, Molecular Biology +14
CaverDock: A Novel Method for the Fast Analysis of Ligand Transport
Jiří Filipovič, Ondřej Vávra, Jan Plhák et al. · IEEE/ACM Transactions on Computational Biology and Bioinformatics · 2019 · 57 citations · Full text
Natural Sciences, Biophysics, Chemistry +17
Caver Web 2.0: analysis of tunnels and ligand transport in dynamic ensembles of proteins
Sérgio M. Marques, Simeon Borko, Ondřej Vávra et al. · Nucleic Acids Research · 2025 · 36 citations · Full text
Life Sciences, Bioinformatics, Molecular Biology +13
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