Scott D. Kennedy

Reparameterization of RNA χ Torsion Parameters for the AMBER Force Field and Comparison to NMR Spectra for Cytidine and Uridine

Ilyas Yildirim, Harry A. Stern, Scott D. Kennedy et al. · Journal of Chemical Theory and Computation · 2010 · 169 citations · Full text

Nmr Spectra, Molecular Biology, Amber Force Field +17

Conformational ensembles of RNA oligonucleotides from integrating NMR and molecular simulations

Sandro Bottaro, Giovanni Bussi, Scott D. Kennedy et al. · Science Advances · 2018 · 139 citations · Full text

Stacking in RNA: NMR of Four Tetramers Benchmark Molecular Dynamics

David E. Condon, Scott D. Kennedy, Brendan C. Mort et al. · Journal of Chemical Theory and Computation · 2015 · 119 citations · Full text

Benchmarking AMBER Force Fields for RNA: Comparisons to NMR Spectra for Single-Stranded r(GACC) Are Improved by Revised χ Torsions

Ilyas Yildirim, Harry A. Stern, Jason D. Tubbs et al. · The Journal of Physical Chemistry B · 2011 · 102 citations · Full text

Nmr Spectra, Molecular Biology, Amber Force Fields +22

Secondary structure prediction for RNA sequences including N6-methyladenosine

Elżbieta Kierzek, Xiaoju Zhang, Richard M. Watson et al. · Nature Communications · 2022 · 92 citations · Full text