Stephen D. Shank

Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes

Steven Weaver, Stephen D. Shank, Stephanie J. Spielman et al. · Molecular Biology and Evolution · 2017 · 1.1K citations · Full text

Life Sciences, Bioinformatics, Evolutionary Biology +12

HyPhy 2.5—A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies

Sergei L. Kosakovsky Pond, Art F. Y. Poon, Ryan Velazquez et al. · Molecular Biology and Evolution · 2019 · 776 citations · Full text

Life Sciences, Bioinformatics, Evolutionary Biology +16

The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages

Darren P. Martin, Steven Weaver, Houriiyah Tegally et al. · Cell · 2021 · 274 citations · Full text

Life Sciences, Biology, Evolutionary Biology +14

Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function

Darren P. Martin, Spyros Lytras, Alexander G. Lucaci et al. · Molecular Biology and Evolution · 2022 · 123 citations · Full text

Life Sciences, Evolutionary Biology, Genetics +15

Synonymous Site-to-Site Substitution Rate Variation Dramatically Inflates False Positive Rates of Selection Analyses: Ignore at Your Own Peril

Sadie R Wisotsky, Sergei L. Kosakovsky Pond, Stephen D. Shank et al. · Molecular Biology and Evolution · 2020 · 104 citations · Full text

Life Sciences, Biology, Evolutionary Biology +13