José-Juan Tapia

BioNetGen 2.2: advances in rule-based modeling

Leonard A. Harris, Justin Hogg, José-Juan Tapia et al. · Bioinformatics · 2016 · 238 citations · Full text

Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories

Rory Donovan-Maiye, José-Juan Tapia, Devin P. Sullivan et al. · PLoS Computational Biology · 2016 · 45 citations · Full text

Parallel Trajectories, Engineering, Rare Event Sampling +24

Graphics processing unit based direct simulation Monte Carlo

Denis Gladkov, José-Juan Tapia, Samuel Alberts et al. · SIMULATION · 2011 · 16 citations

Engineering, Fluid Mechanics, Computer Architecture +21

MOSBIE: a tool for comparison and analysis of rule-based biochemical models

John Wenskovitch, Leonard A. Harris, José-Juan Tapia et al. · BMC Bioinformatics · 2014 · 15 citations · Full text

Automated visualization of rule-based models

John A. P. Sekar, José-Juan Tapia, James R. Faeder · PLoS Computational Biology · 2017 · 15 citations · Full text

Engineering, Molecular Biology, Molecular Graphic +19