Identification of Functional Elements and Regulatory Circuits by <i>Drosophila</i> modENCODE

Sushmita Roy, Jason Ernst, Peter V. Kharchenko, +168

Science

The Mirtron Pathway Generates microRNA-Class Regulatory RNAs in Drosophila

Katsutomo Okamura, Joshua W. Hagen, Hong Duan, +2

Cell

Mirtron PathwayGeneticsMicrorna DetectionSmall RnaGene Expression +2

Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways

Katsutomo Okamura, Akira Ishizuka, Haruhiko Siomi, +1

Genes & Development

EngineeringGeneticsMolecular BiologyArgonaute ProteinsDistinct Argonaute +14

The regulatory activity of microRNA* species has substantial influence on microRNA and 3′ UTR evolution

Katsutomo Okamura, Michael D. Phillips, David M. Tyler, +3

Nature Structural & Molecular Biology

EngineeringMedicineGeneticsSubstantial InfluenceRna Biology +10

The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs

Katsutomo Okamura, Wei‐Jen Chung, J. Graham Ruby, +3

Nature

Developmental BiologyGeneticsSmall RnaGene ExpressionMedicine +2

A Broadly Conserved Pathway Generates 3′UTR-Directed Primary piRNAs

Nicolas Robine, Nelson C. Lau, Sudha Balla, +5

Current Biology

Transcriptional RegulationGeneticsMolecular GeneticsBroadly Conserved PathwayGene Expression +2

Distinct Mechanisms for MicroRNA Strand Selection by Drosophila Argonautes

Katsutomo Okamura, Na Liu, Eric C. Lai

Molecular Cell

GeneticsMicrorna Strand SelectionRna BiologyMolecular GeneticsSmall Rna +4

Dissociation of Kar2p/BiP from an ER Sensory Molecule, Ire1p, Triggers the Unfolded Protein Response in Yeast

Katsutomo Okamura, Yukio Kimata, H. Higashio, +2

Biochemical and Biophysical Research Communications

Er Sensory MoleculeProtein FunctionSignal TransductionBiochemistryProtein Folding +8

Endogenous RNA Interference Provides a Somatic Defense against Drosophila Transposons

Wei‐Jen Chung, Katsutomo Okamura, Raquel Martín-Folgar, +1

Current Biology

BiologyNatural SciencesGeneticsRna BiologyGene Regulation +5

Deep annotation of <i>Drosophila melanogaster</i> microRNAs yields insights into their processing, modification, and emergence

Eugène Berezikov, Nicolas Robine, Anastasia Samsonova, +14

Genome Research