DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data

Gustavo Arango-Argoty, Emily Garner, Amy Pruden, +3

Microbiome

Biofilms as a sink for antibiotic resistance genes (ARGs) in the Yangtze Estuary

Xing-pan Guo, Yi Yang, Da-pei Lu, +8

Water Research

Antimicrobial Resistance GeneHealth SciencesMedicineYangtze EstuaryMicrobial Ecology +8

Differential Drivers of Antimicrobial Resistance across the World

Peter J. Vikesland, Emily Garner, Suraj Gupta, +3

Accounts of Chemical Research

Metagenomic Characterization of Antibiotic Resistance Genes in Full-Scale Reclaimed Water Distribution Systems and Corresponding Potable Systems

Emily Garner, Chaoqi Chen, Kang Xia, +5

Environmental Science & Technology

Occurrence and transformation of veterinary antibiotics and antibiotic resistance genes in dairy manure treated by advanced anaerobic digestion and conventional treatment methods

Joshua S. Wallace, Emily Garner, Amy Pruden, +1

Environmental Pollution

Dairy ManureAntimicrobial Resistance GeneVeterinary AntibioticsAntimicrobial SusceptibilityAntibiotics +6

Stormwater loadings of antibiotic resistance genes in an urban stream

Emily Garner, Romina Benitez, Emily von Wagoner, +6

Water Research

Antimicrobial Resistance GeneEngineeringAntibioticsStormwater ManagementEnvironmental Microbiology +7

Evaluation of Metagenomic-Enabled Antibiotic Resistance Surveillance at a Conventional Wastewater Treatment Plant

Haniyyah Majeed, Maria V. Riquelme, Benjamin C. Davis, +6

Frontiers in Microbiology

<i>Legionella</i> DNA Markers in Tap Water Coincident with a Spike in Legionnaires’ Disease in Flint, MI

David Otto Schwake, Emily Garner, Owen R. Strom, +2

Environmental Science & Technology Letters

Cl2 ResidualChlorine ResidualMicrobial ContaminationLegionella PneumophilaPathogenesis +13

Microbial Ecology and Water Chemistry Impact Regrowth of Opportunistic Pathogens in Full-Scale Reclaimed Water Distribution Systems

Emily Garner, Jean E. McLain, Jolene R. Bowers, +3

Environmental Science & Technology

Opportunistic PathogensEngineeringMicrobial ContaminationWater ReuseEnvironmental Engineering +12

Demonstrating a Comprehensive Wastewater-Based Surveillance Approach That Differentiates Globally Sourced Resistomes

Maria V. Riquelme, Emily Garner, Suraj Gupta, +14

Environmental Science & Technology

EngineeringMunicipal WastewaterAntibiotic ResistanceAntibiotic Resistance GenesWastewater Treatment +19