Daniel J. Gaffney

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

Jordana T. Bell, Athma A. Pai, Joseph K. Pickrell et al. · Genome biology · 2011 · 868 citations · Full text

DNase I sensitivity QTLs are a major determinant of human expression variation

Jacob F. Degner, Athma A. Pai, Roger Piqué-Regi et al. · Nature · 2012 · 698 citations

Human Expression Variation, Natural Sciences, Genetics +11

Common genetic variation drives molecular heterogeneity in human iPSCs

Helena Kilpinen, Ângela Gonçalves, Andreas Leha et al. · Nature · 2017 · 627 citations · Full text

Allelic Variant, Human Variation, Genetics +3

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

Roger Piqué-Regi, Jacob F. Degner, Athma A. Pai et al. · Genome Research · 2010 · 572 citations · Full text

Genetics, Gene Regulatory Network, Gene Recognition +20

Souporcell: robust clustering of single-cell RNA-seq data by genotype without reference genotypes

Haynes Heaton, Arthur M. Talman, Andrew Knights et al. · Nature Methods · 2020 · 506 citations · Full text

Robust Clustering, Engineering, Single Cell Sequencing +13