MAGIA, a web-based tool for miRNA and Genes Integrated Analysis

Gabriele Sales, Alessandro Coppe, Andrea Bisognin, +3

Nucleic Acids Research

EngineeringGeneticsTranscriptomics TechnologyGenomicsBioinformatics Database +18

Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

Massimo Milan, Alessandro Coppe, Richard Reinhardt, +8

BMC Genomics

MAGIA2: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update)

Andrea Bisognin, Gabriele Sales, Alessandro Coppe, +2

Nucleic Acids Research

GeneticsGene Regulatory NetworkEpigeneticsTranscriptional RegulationMagia Web Tool +16

Novel definition files for human GeneChips based on GeneAnnot

Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, +7

BMC Bioinformatics

Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel

Alessandro Coppe, José Martín Pujolar, Gregory E. Maes, +5

BMC Genomics

Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon

Michele Vidotto, Alessandro Grapputo, Elisa Boscari, +5

BMC Genomics

Surviving in a toxic world: transcriptomics and gene expression profiling in response to environmental pollution in the critically endangered European eel

José Martín Pujolar, Ilaria AM Marino, Massimo Milan, +12

BMC Genomics

Genome Evolution in the Cold: Antarctic Icefish Muscle Transcriptome Reveals Selective Duplications Increasing Mitochondrial Function

Alessandro Coppe, Cecilia Agostini, Ilaria A. M. Marino, +4

Genome Biology and Evolution

Comparative GenomicsGeneticsMolecular GeneticsGenomicsAntarctic Notothenioids +17

mRNA-Seq and microarray development for the Grooved carpet shell clam, Ruditapes decussatus: a functional approach to unravel host -parasite interaction

Ricardo B. Leite, Massimo Milan, Alessandro Coppe, +7

BMC Genomics

Impact of Host Genes and Strand Selection on miRNA and miRNA* Expression

M. Biasiolo, Gabriele Sales, Marta Lionetti, +7

PLoS ONE