Ultra-fast label-free quantification and comprehensive proteome coverage with narrow-window data-independent acquisition

Ulises H. Guzmán, Ana Martínez‐Val, Zilu Ye, +19

Nature Biotechnology

An Atlas of Human Glycosylation Pathways Enables Display of the Human Glycome by Gene Engineered Cells

Yoshiki Narimatsu, Hiren J. Joshi, Rebecca Nason, +21

Molecular Cell

Human GlycomeHuman CellEngineeringGene Engineered CellsMedicine +7

Display of the human mucinome with defined O-glycans by gene engineered cells

Rebecca Nason, Christian Büll, Andriana Konstantinidi, +23

Nature Communications

Glyco-DIA: a method for quantitative O-glycoproteomics with in silico-boosted glycopeptide libraries

Zilu Ye, Yang Mao, Henrik Clausen, +1

Nature Methods

GlycoproteomicsBiochemistryNatural SciencesMedicineBioanalysis +10

Site-specific O-glycosylation of members of the low-density lipoprotein receptor superfamily enhances ligand interactions

Shengjun Wang, Yang Mao, Yoshiki Narimatsu, +17

Journal of Biological Chemistry

An atlas of O-linked glycosylation on peptide hormones reveals diverse biological roles

Thomas D. Madsen, Lasse H. Hansen, John Hintze, +13

Nature Communications

GlycobiologyMolecular BiologyPeptide Half-livesChemical BiologyBiosynthesis +18

Enhanced sensitivity and scalability with a Chip-Tip workflow enables deep single-cell proteomics

Zilu Ye, Pierre Sabatier, Leander van der Hoeven, +17

Nature Methods

Molecular BiologyChip-tip Workflow EnablesProteomic TechnologySingle Cell SequencingProteomics +14

One-Tip enables comprehensive proteome coverage in minimal cells and single zygotes

Zilu Ye, Pierre Sabatier, Javier Martín‐González, +10

Nature Communications

Biological Mass SpectrometryMolecular BiologyCytoskeletonSingle ZygotesCellular Physiology +26

A deeper look at carrier proteome effects for single-cell proteomics

Zilu Ye, Tanveer S. Batth, Patrick Rüther, +1

Communications Biology

The glycosylation design space for recombinant lysosomal replacement enzymes produced in CHO cells

Weihua Tian, Zilu Ye, Shengjun Wang, +15

Nature Communications