GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

Elizabeth I. Boyle, Shuai Weng, Jeremy Gollub, +4

Bioinformatics

Decoding global gene expression programs in liver cancer by noninvasive imaging

Eran Segal, Claude B. Sirlin, Clara Ooi, +8

Nature Biotechnology

Systems BiologyFunctional GenomicsHepatologyEngineeringMedicine +12

A global reference for human genetic variation

Adam Auton, Gonçalo R. Abecasis, David Altshuler, +476

Civil War Book Review

Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

Olivier Delaneau, Jonathan Marchini, Gil McVean, +376

Nature Communications

Haplotype DeterminationNext-generation SequencingGeneticsGenomes ProjectArray Data +9

The Stanford Microarray Database: data access and quality assessment tools

Jeremy Gollub

Nucleic Acids Research

Impact of Cellular miRNAs on Circulating miRNA Biomarker Signatures

Radha Duttagupta, Rong Jiang, Jeremy Gollub, +2

PLoS ONE

Genotyping Informatics and Quality Control for 100,000 Subjects in the Genetic Epidemiology Research on Adult Health and Aging (GERA) Cohort

Mark Kvale, Stephanie Hesselson, Thomas J. Hoffmann, +41

Genetics

Next generation genome-wide association tool: Design and coverage of a high-throughput European-optimized SNP array

Thomas J. Hoffmann, Mark Kvale, Stephanie Hesselson, +44

Genomics

Genome-wide Association StudyEngineeringNext-generation SequencingGeneticsComputational Genomics +6

A Gene Expression Biomarker Provides Early Prediction and Mechanistic Assessment of Hepatic Tumor Induction by Nongenotoxic Chemicals

Mark R. Fielden, Richard Brennan, Jeremy Gollub

Toxicological Sciences

Signature ProfileEngineeringPathologyNongenotoxic ChemicalsTumor Biology +19

Design and coverage of high throughput genotyping arrays optimized for individuals of East Asian, African American, and Latino race/ethnicity using imputation and a novel hybrid SNP selection algorithm

Thomas J. Hoffmann, Yiping Zhan, Mark Kvale, +19

Genomics

East AsianGenome-wide Association StudyHaplotype DeterminationGenotype-phenotype AssociationMedicine +11