Concepedia

Sergei Y. Ponomarev

SY

11

Publications

514

Citations

10

H-Index

2004

Active since

Affiliations

Worcester Polytechnic Institute(Current)

Wesleyan University

Sergei Y. Ponomarev is an author at Worcester Polytechnic Institute specializing in biophysics, molecular biology, and natural sciences.

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Publications per year

2004–2014

11

Publications

11

Ion motions in molecular dynamics simulations on DNA

Sergei Y. Ponomarev, Kelly M. Thayer, David L. Beveridge · Proceedings of the National Academy of Sciences · 2004 · 227 citations · Full text

Dynamics of Water and Ions Near DNA: Comparison of Simulation to Time-Resolved Stokes-Shift Experiments

Sobhan Sen, Daniele Andreatta, Sergei Y. Ponomarev et al. · Journal of the American Chemical Society · 2009 · 91 citations · Full text

Spectroscopic and Molecular Dynamics Evidence for a Sequential Mechanism for the A-to-B Transition in DNA

Kelly M. Knee, Surjit B. Dixit, Colin Echeverría Aitken et al. · Biophysical Journal · 2008 · 39 citations · Full text

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Root Mean Square Deviation Probability Analysis of Molecular Dynamics Trajectories on DNA

Surjit B. Dixit, Sergei Y. Ponomarev, David L. Beveridge · Journal of Chemical Information and Modeling · 2006 · 36 citations

, , +20

Polarizable Simulations with Second-Order Interaction Model—Force Field and Software for Fast Polarizable Calculations: Parameters for Small Model Systems and Free Energy Calculations

George A. Kaminski, Sergei Y. Ponomarev, Aibing B. Liu · Journal of Chemical Theory and Computation · 2009 · 28 citations · Full text

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