Accurate Phylogenetic Relationships Among Mycobacterium bovis Strains Circulating in France Based on Whole Genome Sequencing and Single Nucleotide Polymorphism Analysis

Amandine Hauer, Lorraine Michelet, Thierry Cochard, +4

Frontiers in Microbiology

Environmental Mycobacterium avium subsp. paratuberculosis Hosted by Free-Living Amoebae

Ascel Samba‐Louaka, Etienne Robino, Thierry Cochard, +7

Frontiers in Cellular and Infection Microbiology

The complete genome sequence of Mycobacterium bovis Mb3601, a SB0120 spoligotype strain representative of a new clonal group

Maxime Branger, Valentin Loux, Thierry Cochard, +3

Infection Genetics and Evolution

MedicineGeneticsBacteriologyMicrobiologyGenomics +4

Genetic Diversity Among Mycobacterium avium Subspecies Revealed by Analysis of Complete Genome Sequences

John P. Bannantine, Cyril Condé, Darrell O. Bayles, +2

Frontiers in Microbiology

Interferon gamma response to Mycobacterium avium subsp. paratuberculosis specific lipopentapeptide antigen L5P in cattle

Sébastien Holbert, Maxime Branger, Armel Souriau, +9

Research in Veterinary Science

Veterinary VaccineMycobacterium Avium SubspAnimal SciencePathogenesisImmunology +8

In silico epitope analysis of unique and membrane associated proteins from Mycobacterium avium subsp. paratuberculosis for immunogenicity and vaccine evaluation

Perla Carlos, Virginie Roupie, Sébastien Holbert, +6

Journal of Theoretical Biology

Pulmonary TuberculosisMycobacterium Avium SubspSilico Epitope AnalysisPathogenesisImmunology +6

MIRU-VNTR allelic variability depends on Mycobacterium bovis clonal group identity

Amandine Hauer, Lorraine Michelet, Krystel de Cruz, +6

Infection Genetics and Evolution

Medical MicrobiologyMedicineGeneticsBacteriologyGenomics +6

GenoFig: a user-friendly application for the visualization and comparison of genomic regions

Maxime Branger, S. Leclercq

Bioinformatics

MAC-INMV-SSR: a web application dedicated to genotyping members of Mycobacterium avium complex (MAC) including Mycobacterium avium subsp. paratuberculosis strains

Thierry Cochard, Maxime Branger, Philip Supply, +2

Infection Genetics and Evolution

Medical MicrobiologyMycobacterium Avium SubspMedicineBacteriologyMycobacterium Avium Complex +6

Whole-Genome Analysis of Mycobacterium avium subsp. paratuberculosis IS900Insertions Reveals Strain Type-Specific Modalities

Cyril Condé, Marian Price-Carter, Thierry Cochard, +5

Frontiers in Microbiology