Vsevolod J. Makeev

Assessing computational tools for the discovery of transcription factor binding sites

Martin Tompa, Nan Li, Timothy L. Bailey et al. · Nature Biotechnology · 2005 · 1.3K citations · Full text

Bioinformatics, Sequence Motif, Computational Tools +13

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis

Ivan V. Kulakovskiy, Ilya E. Vorontsov, Ivan Yevshin et al. · Nucleic Acids Research · 2017 · 1K citations · Full text

Genetics, Molecular Biology, Large-scale Chip-seq Analysis +19

An integrated expression atlas of miRNAs and their promoters in human and mouse

Derek de Rie, Imad Abugessaisa, Tanvir Alam et al. · Nature Biotechnology · 2017 · 588 citations · Full text

Functional Genomics, Genetics, Rna Biology +8

GTRD: an integrated view of transcription regulation

Semyon Kolmykov, Ivan Yevshin, Mikhail A. Kulyashov et al. · Nucleic Acids Research · 2020 · 280 citations · Full text

Genetics, Cell Ontology, Gene Regulatory Network +17

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models

Ivan V. Kulakovskiy, Ilya E. Vorontsov, Ivan Yevshin et al. · Nucleic Acids Research · 2015 · 249 citations · Full text

Genetics, Molecular Biology, Gene Regulatory Network +21