Identification of antiviral phytochemicals as a potential SARS-CoV-2 main protease (Mpro) inhibitor using docking and molecular dynamics simulations

Chirag Patel, Siddhi P. Jani, Dharmesh G. Jaiswal, +5

Scientific Reports

Transcriptome-wide miRNA identification of <i>Bacopa monnieri</i>: a cross-kingdom approach

Harshida Gadhavi, Maulikkumar Patel, Naman Mangukia, +5

Plant Signaling & Behavior

Computational identification of miRNA and their cross kingdom targets from expressed sequence tags of Ocimum basilicum

Maulikkumar Patel, Naman Mangukia, Neha Jha, +6

Molecular Biology Reports

Cross Kingdom TargetsFunctional GenomicsGene RecognitionGeneticsGene Expression +9

Transcriptome analysis of sesame-Macrophomina phaseolina interactions revealing the distinct genetic components for early defense responses

Nidhi Radadiya, Naman Mangukia, Virali Antala, +7

Physiology and Molecular Biology of Plants

BiologyPlant ImmunityTranscriptome AnalysisPlant Defence ActivatorNatural Sciences +10

Identifying potential human and medicinal plant microRNAs against SARS-CoV-2 3′UTR region: A computational genomics assessment

Naman Mangukia, Priyashi Rao, Kamlesh R. Patel, +2

Computers in Biology and Medicine

Functional GenomicsComputational Genomics AssessmentEngineeringGeneticsRna Biology +10

Ocimum basilicum miRNOME revisited: A cross kingdom approach

Maulikkumar Patel, Shanaya Patel, Naman Mangukia, +4

Genomics

BiologyBotanyCross Kingdom ApproachNatural SciencesSymbiosis +1

Exploring the MiRnome of Carica papaya: A cross kingdom approach

Neha Jha, Naman Mangukia, Maulikkumar Patel, +4

Gene Reports

BiologyPlant BiologyPlant AnalysisCarotenoidBotany +3

Unveiling the nature's fruit basket to computationally identify Citrus sinensis csi-mir169–3p as a probable plant miRNA against Reference and Omicron SARS-CoV-2 genome

Naman Mangukia, Priyashi Rao, Kamlesh R. Patel, +2

Computers in Biology and Medicine

BiologyFruit BasketFunctional GenomicsCitrus Sinensis Csi-mir169–3pGenetics +12

Small RNA sequencing and identification of papaya (Carica papaya L.) miRNAs with potential cross-kingdom human gene targets

Neha Jha, Naman Mangukia, Harshida Gadhavi, +4

Molecular Genetics and Genomics

BioinformaticsCarica Papaya L.GeneticsRna BiologySmall Rna Sequencing +7