Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer

Babak Ehteshami Bejnordi, Mitko Veta, Paul Johannes van Diest, +65

JAMA

Data-analysis strategies for image-based cell profiling

Juan Carlos Caicedo, Sam Cooper, Florian Heigwer, +21

Nature Methods

EngineeringMicroscopyBiometricsCellular PhysiologyImage Analysis +15

Classifying and segmenting microscopy images with deep multiple instance learning

Oren Kraus, Jimmy Ba, Brendan J. Frey

Bioinformatics

Automated analysis of high‐content microscopy data with deep learning

Oren Kraus, Ben T. Grys, Jimmy Ba, +4

Molecular Systems Biology

Exploring whole-genome duplicate gene retention with complex genetic interaction analysis

Elena Kuzmin, Benjamin VanderSluis, Alex N. Nguyen Ba, +17

Science

Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting

Alex X. Lu, Oren Kraus, Sam Cooper, +1

PLoS Computational Biology

Convolutional Neural NetworkEngineeringMachine LearningMicroscopyMolecular Biology +20

Proteome-scale movements and compartment connectivity during the eukaryotic cell cycle

Athanasios Litsios, Benjamin Grys, Oren Kraus, +12

Cell

RxRx1: A Dataset for Evaluating Experimental Batch Correction Methods

Maciej Sypetkowski, Morteza Rezanejad, Saber Saberian, +9

EngineeringSample TreatmentData PreparationVisual InspectionHigh-throughput Screening Techniques +17

Integrating images from multiple microscopy screens reveals diverse patterns of change in the subcellular localization of proteins

Alex X. Lu, Yolanda Chong, Ian Hsu, +5

eLife

EngineeringMicroscopySubcellular LocalizationMolecular BiologyCytoskeleton +18

Masked Autoencoders for Microscopy are Scalable Learners of Cellular Biology

Oren Kraus, Kian Kenyon-Dean, Saber Saberian, +14