Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain

Boris Rogelj, Laura E. Easton, Gireesh K. Bogu, +12

Scientific Reports

Heteromeric RNP Assembly at LINEs Controls Lineage-Specific RNA Processing

Jan Attig, Federico Agostini, Clare Gooding, +8

Cell

Natural SciencesRna Binding ProteinsRna BiologyMolecular BiologyGene Expression +2

Recursive splicing in long vertebrate genes

Christopher R. Sibley, Warren Emmett, Lorea Blázquez, +12

Nature

BiologyTranscriptional RegulationGeneticsRna SplicingGene Structure +6

High-Resolution RNA Maps Suggest Common Principles of Splicing and Polyadenylation Regulation by TDP-43

Gregor Rot, Zhen Wang, Ina Huppertz, +7

Cell Reports

Exon Junction Complex Shapes the Transcriptome by Repressing Recursive Splicing

Lorea Blázquez, Warren Emmett, Rupert Faraway, +8

Molecular Cell

Insights into the design and interpretation of iCLIP experiments

Nejc Haberman, Ina Huppertz, Jan Attig, +10

Genome biology

3′ UTR Length and Messenger Ribonucleoprotein Composition Determine Endocleavage Efficiencies at Termination Codons

Volker Boehm, Nejc Haberman, Franziska Ottens, +2

Cell Reports

Splicing repression allows the gradual emergence of new Alu-exons in primate evolution

Jan Attig, Igor Ruiz de los Mozos, Nejc Haberman, +5

eLife

New Alu-exonsGeneticsRna SplicingMolecular GeneticsPrimate Systematics +20

Splicing of long non-coding RNAs primarily depends on polypyrimidine tract and 5′ splice-site sequences due to weak interactions with SR proteins

Zuzana Krchňáková, Prasoon Kumar Thakur, Michaela Krausová, +4

Nucleic Acids Research

Data Science Issues in Studying Protein–RNA Interactions with CLIP Technologies

Anob M. Chakrabarti, Nejc Haberman, Arne Praznik, +2

Annual Review of Biomedical Data Science

EngineeringGeneticsData Science IssuesMolecular BiologyGene Expression Profiling +14