Nature Genetics · 2025 · 27 citations · 77 references
AgricultureAgronomyPlant SciencesCrop ImprovementPlant GeneticsPlant GenomicsAgronomic Performance EvaluationAgronomic Trait EvaluationCrop GenomicsPan-genome AnalysisPlant Breeding GeneticsAgronomic ProductivityAgronomic Trait DiscoveryAgronomic Trait ImprovementPan-genomic DiversityPlant Pan-genomicsYield Trait GenomicsYield-related Trait Analysis
77
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Corinna Cortes, Vladimir Vapnik · Machine Learning · 1995 · 40.5K citations · Full text
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text
The variant call format and VCFtools
Petr Danecek, Adam Auton, Gonçalo R. Abecasis et al. · Bioinformatics · 2011 · 17.8K citations · Full text