Concepedia

FoxA1/2-dependent epigenomic reprogramming drives lineage switching in lung adenocarcinoma

Katherine Gillis, Walter A. Orellana, Emily Wilson, Timothy J. Parnell, Gabriela Fort, Pengshu Fang, Headtlove Essel Dadzie, Brandon Murphy, Xiaoyang Zhang, Eric L. Snyder

Developmental Cell · 2024 · 15 citations · 55 references

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55

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

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BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 23K citations · Full text

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