npj Biological Timing and Sleep · 2024 · 12 citations · 53 references
Life SciencesGeneticsMolecular BiologyCircadian RhythmsGene ExpressionTranscriptomicsCircadian Clock MechanismsCircadian Gene ExpressionCircadian Molecular MechanismsCircadian PhysiologyTemporal TranscriptomicsTranscriptomics Of Marine OrganismsCircadian MetabolismCircadian Regulation Of Gene ExpressionCircadian Rhythm Gene ExpressionCircadian Transcriptional OscillationsCircadian Transcriptional RegulationHomologyTranscriptome ProfilingUltradian Rhythms
Mice and many marine organisms exhibit ~12-h ultradian rhythms, however, direct evidence of ~12-h ultradian rhythms in humans is lacking. Here, we performed prospective, temporal transcriptome profiling of peripheral white blood cells from three healthy humans. All three participants independently exhibited robust ~12-h transcriptional rhythms in molecular programs involved in RNA and protein metabolism, with strong homology to circatidal gene programs previously identified in Cnidarian marine species.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
STAR: ultrafast universal RNA-seq aligner
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Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization
Nicholas H. Putnam, Mansi Srivastava, Uffe Hellsten et al. · Science · 2007 · 1.6K citations · Full text