Nature Microbiology · 2024 · 22 citations · 41 references
Veterinary MedicineImmunologyInfectious DiseasesInflammationInnate ImmunitySepsisComplications Of SepsisEndothelial ActivationEndothelial DysfunctionSepsis ManagementSepsis PathophysiologySeptic ShockEndothelial Inflammatory SignalingInflammation-induced Endothelial DysfunctionLipopolysaccharide-binding ProteinSepsis-associated Cytokine ResponseSepsis-associated InflammationSepsis-induced Tissue InjuryVascular Endothelial Dysfunction
41
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text