Science Immunology · 2024 · 49 citations · 57 references
MedicineCell BiologyOncologyCancer ImmunologyMolecular OncologyTumor MicroenvironmentCancer ProgressionCancer TranscriptomicsCell-fate DynamicsMolecular Tumor ProfilingTumor Immune MicroenvironmentTumor-associated MacrophagesCancer-associated MacrophagesFlow Cytometry ImmunophenotypingMonocyte BiologyMonocyte-derived MacrophagesMonocyte-to-macrophage DifferentiationSingle-cell Profiling Of MacrophagesTissue Expression ProfilesTumor-associated Macrophage Heterogeneity
Tumor-associated macrophages (TAMs) are a heterogeneous population of cells whose phenotypes and functions are shaped by factors that are incompletely understood. Herein, we asked when and where TAMs arise from blood monocytes and how they evolve during tumor development. We initiated pancreatic ductal adenocarcinoma (PDAC) in inducible monocyte fate-mapping mice and combined single-cell transcriptomics and high-dimensional flow cytometry to profile the monocyte-to-TAM transition. We revealed that monocytes differentiate first into a transient intermediate population of TAMs that generates two longer-lived lineages of terminally differentiated TAMs with distinct gene expression profiles, phenotypes, and intratumoral localization. Transcriptome datasets and tumor samples from patients with PDAC evidenced parallel TAM populations in humans and their prognostic associations. These insights will support the design of new therapeutic strategies targeting TAMs in PDAC.
57
Fiji: an open-source platform for biological-image analysis
Johannes Schindelin, Ignacio Arganda‐Carreras, Erwin Frise et al. · Nature Methods · 2012 · 70.9K citations
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
Comprehensive Integration of Single-Cell Data
Tim Stuart, Andrew Butler, Paul Hoffman et al. · Cell · 2019 · 16.9K citations · Full text