Nature Communications · 2024 · 129 citations · 42 references
AgriculturePlant BiologyPlant SciencesHost-pathogen InteractionsMicrobial PathogenesisPlant-microbe InteractionsBacterial Plant PathogensPlant Defense ResponsesPlant Immune ResponsesPlant PathogenesisPlant-pathogen InteractionsRhizosphere BiologyCrop Growth PromotionPathogen Invasion MechanismsPathogen Resistance InductionPathogenicity MechanismsPlant Defense SuppressionPlant Pathogen EffectorsRhizosphere PathogensRoot Growth Promotion
Plants are capable of assembling beneficial rhizomicrobiomes through a "cry for help" mechanism upon pathogen infestation; however, it remains unknown whether we can use nonpathogenic strains to induce plants to assemble a rhizomicrobiome against pathogen invasion. Here, we used a series of derivatives of Pseudomonas syringae pv. tomato DC3000 to elicit different levels of the immune response to Arabidopsis and revealed that two nonpathogenic DC3000 derivatives induced the beneficial soil-borne legacy, demonstrating a similar "cry for help" triggering effect as the wild-type DC3000. In addition, an increase in the abundance of Devosia in the rhizosphere induced by the decreased root exudation of myristic acid was confirmed to be responsible for growth promotion and disease suppression of the soil-borne legacy. Furthermore, the "cry for help" response could be induced by heat-killed DC3000 and flg22 and blocked by an effector triggered immunity (ETI) -eliciting derivative of DC3000. In conclusion, we demonstrate the potential of nonpathogenic bacteria and bacterial elicitors to promote the generation of disease-suppressive soils.
42
UPARSE: highly accurate OTU sequences from microbial amplicon reads
R. C. Edgar · Nature Methods · 2013 · 17.3K citations
UCHIME improves sensitivity and speed of chimera detection
R. C. Edgar, Brian J. Haas, José C. Clemente et al. · Bioinformatics · 2011 · 15.5K citations · Full text
Life Sciences, Biology, Microbiology +17
VSEARCH: a versatile open source tool for metagenomics
Torbjørn Rognes, Tomáš Flouri, Ben Nichols et al. · PeerJ · 2016 · 11K citations · Full text
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
Jiajie Zhang, Kassian Kobert, Tomáš Flouri et al. · Bioinformatics · 2013 · 4.9K citations · Full text
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
James R. Cole, Qi Wang, Erick Cardenas et al. · Nucleic Acids Research · 2008 · 4.9K citations · Full text