Designed allosteric protein logic

UCSF Chimera—A visualization system for exploratory research and analysis

Eric F. Pettersen, Thomas D. Goddard, Conrad C. Huang et al. · Journal of Computational Chemistry · 2004 · 46.8K citations

Interactive Visualization, Extensible Visualization System, Ucsf Chimera +15

Highly accurate protein structure prediction with AlphaFold

John Jumper, Alexander Pritzel, Tim Green et al. · Nature · 2021 · 42K citations · Full text

GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers

M Abraham, Teemu J. Murtola, Roland Schulz et al. · SoftwareX · 2015 · 25K citations · Full text

Massively-parallel Computing, Engineering, Computational Biology +12

Array programming with NumPy

Nature · 2020 · 20.4K citations · Full text

ColabFold: making protein folding accessible to all

Milot Mirdita, Konstantin Schütze, Yoshitaka Moriwaki et al. · Nature Methods · 2022 · 9.1K citations · Full text