Concepedia

Adaptive evolution and co-evolution of chloroplast genomes in Pteridaceae species occupying different habitats: overlapping residues are always highly mutated

Xiaolin Gu, Lingling Li, Sicong Li, Wanxin Shi, Xiaona Zhong, Yingjuan Su, Ting Wang

BMC Plant Biology · 2023 · 13 citations · 59 references

DOIFull text

Open access

References

59

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh, Daron M. Standley · Molecular Biology and Evolution · 2013 · 45.6K citations · Full text

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis · Bioinformatics · 2014 · 33.3K citations · Full text

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MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Fredrik Ronquist, Maxim Teslenko, Paul van der Mark et al. · Systematic Biology · 2012 · 26.9K citations · Full text

PAML 4: Phylogenetic Analysis by Maximum Likelihood

Molecular Biology and Evolution · 2007 · 14.3K citations · Full text

Jalview Version 2—a multiple sequence alignment editor and analysis workbench

Andrew Waterhouse, James B Procter, David Martin et al. · Bioinformatics · 2009 · 10.5K citations · Full text