Concepedia

Inferring mechanical properties of the SARS-CoV-2 virus particle with nano-indentation tests and numerical simulations

Aida Nonn, Bálint Kiss, Weria Pezeshkian, Thomas Tancogne‐Dejean, Albert R. Cerrone, Miklós Kellermayer, Yuanli Bai, Wei Li, Tomasz Wierzbicki

Journal of the mechanical behavior of biomedical materials/Journal of mechanical behavior of biomedical materials · 2023 · 11 citations · 40 references

DOI

Concepts

References

40

Molecular dynamics with coupling to an external bath

Herman J. C. Berendsen, Johan P. M. Postma, Wilfred F. van Gunsteren et al. · The Journal of Chemical Physics · 1984 · 31K citations · Full text

, , +17

GROMACS: Fast, flexible, and free

David van der Spoel, Erik Lindahl, Berk Hess et al. · Journal of Computational Chemistry · 2005 · 19.1K citations

, , +17

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

Sander Pronk, Szilárd Páll, Roland Schulz et al. · Bioinformatics · 2013 · 7.6K citations · Full text

, , +17

Crystal Structure and Pair Potentials: A Molecular-Dynamics Study

Michele Parrinello, A. Rahman · Physical Review Letters · 1980 · 3.7K citations

, , +8

Martini 3: a general purpose force field for coarse-grained molecular dynamics

Paulo C. T. Souza, Riccardo Alessandri, Jonathan Barnoud et al. · Nature Methods · 2021 · 1.6K citations · Full text

, , +16