Concepedia

Allele-specific expression reveals genetic drivers of tissue regeneration in mice

Katya L. Mack, Heather E. Talbott, Michelle Griffin, Jennifer Parker, Nicholas Guardino, Amanda Spielman, Michael F. Davitt, Shamik Mascharak, Mauricio Downer, Annah Morgan,

Cell stem cell · 2023 · 25 citations · 58 references

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58

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

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Cutadapt removes adapter sequences from high-throughput sequencing reads

Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text

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BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text

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