Journal of Medicinal Chemistry · 2023 · 25 citations · 32 references
PharmacyMedicinal ChemistryPharmacologyDrug DesignDrug DiscoveryStructure-activity RelationshipsLigand BindingLigand-based DesignPharmacodynamics Of Anticancer AgentsPotency OptimizationQuantitative Structure-activity RelationshipsStructure-activity Relationship AnalysisBinding Mode AnalysisBinding Mode OptimizationCell-based AssaysCocrystal FormationComputer-aided Design OptimizationStructure - Activity Relationship OptimizationStructure-based Ligand DesignX-ray Diffraction Analysis
Novel 2-arylmethoxy-4-(2,2′-dihalogen-substituted biphenyl-3-ylmethoxy) benzylamine derivatives were designed, synthesized, and evaluated in vitro and in vivo against cancers as PD-1/PD-L1 inhibitors. Through the computer-aided structural optimization and the homogeneous time-resolved fluorescence (HTRF) assay, compound A56 was found to most strongly block the PD-1/PD-L1 interaction with an IC 50 value of 2.4 ± 0.8 nM and showed the most potent activity. 1 H NMR titration results indicated that A56 can tightly bind to the PD-L1 protein with K D < 1 μM. The X-ray diffraction data for the cocrystal structure of the A56/ PD-L1 complex (3.5 Å) deciphered a novel binding mode in detail, which can account for its most potent inhibitory activity. Cell-based assays further demonstrated the strong ability of A56 as an hPD-1/hPD-L1 blocker. Especially in an hPD-L1 MC38 humanized mouse model, A56 significantly inhibited tumor growth without obvious toxicity, with a TGI rate of 55.20% (50 mg/kg, i.g.). In conclusion, A56 is a promising clinical candidate worthy of further development.
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<i>Phaser</i>crystallographic software
Airlie J. McCoy, Ralf W. Grosse‐Kunstleve, Paul D. Adams et al. · Journal of Applied Crystallography · 2007 · 20.9K citations · Full text
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Overview of the<i>CCP</i>4 suite and current developments
Martyn Winn, Charles Ballard, Kevin Cowtan et al. · Acta Crystallographica Section D Biological Crystallography · 2011 · 12.6K citations · Full text