Concepedia

Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome

Min Wang, Lucas J. Osborn, Sunit Jain, Xiandong Meng, Allison M. Weakley, Yan Jia, William J. Massey, Venkateshwari Varadharajan, Anthony Horak, Rakhee Banerjee,

Cell · 2023 · 79 citations · 32 references

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32

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile

Charlie G. Buffie, Vanni Bucci, Richard R. Stein et al. · Nature · 2014 · 1.9K citations

, , +14

A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites

Dylan Dodd, Matthew H. Spitzer, William Van Treuren et al. · Nature · 2017 · 1.4K citations

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Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla

Michael A. Mahowald, Federico E. Rey, Henning Seedorf et al. · Proceedings of the National Academy of Sciences · 2009 · 756 citations · Full text

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