Science · 2023 · 169 citations · 192 references
Life SciencesEvolutionary BiologyGeneticsComparative GenomicsMolecular EvolutionPhylogeneticsEvolutionEvolutionary AnthropologyNatural SelectionPhylogenomic AnalysisPrimate EvolutionVertebrate EvolutionGenomic Rearrangement AnalysisKey InnovationsMolecular Evolution In PrimatesPositive SelectionPrimate Adaptive RadiationPrimate OriginsPrimate PhylogeneticsPrimate Phylogeny
Comparative analysis of primate genomes within a phylogenetic context is essential for understanding the evolution of human genetic architecture and primate diversity. We present such a study of 50 primate species spanning 38 genera and 14 families, including 27 genomes first reported here, with many from previously less well represented groups, the New World monkeys and the Strepsirrhini. Our analyses reveal heterogeneous rates of genomic rearrangement and gene evolution across primate lineages. Thousands of genes under positive selection in different lineages play roles in the nervous, skeletal, and digestive systems and may have contributed to primate innovations and adaptations. Our study reveals that many key genomic innovations occurred in the Simiiformes ancestral node and may have had an impact on the adaptive radiation of the Simiiformes and human evolution.
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Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
MUSCLE: multiple sequence alignment with high accuracy and high throughput
R. C. Edgar · Nucleic Acids Research · 2004 · 46.5K citations · Full text