Nature · 2023 · 113 citations · 69 references
Life SciencesEvolutionary BiologyMicrobiologyMetagenomicsPhylogeneticsVirologyAnimal VirusesViral Genome OrganizationViral GenomicsViral MetagenomicsVirus EvolutionVirus Genome OrganizationEnvironmental Viral MetagenomicsEvolutionary TrajectoriesGenome-resolved MetagenomicsGenome-wide PhylogenyMicrobial EukaryotesPhylogenomics Of VirusesVirion MorphogenesisVirus Evolutionary Relationships
Abstract DNA viruses have a major influence on the ecology and evolution of cellular organisms 1–4 , but their overall diversity and evolutionary trajectories remain elusive 5 . Here we carried out a phylogeny-guided genome-resolved metagenomic survey of the sunlit oceans and discovered plankton-infecting relatives of herpesviruses that form a putative new phylum dubbed Mirusviricota . The virion morphogenesis module of this large monophyletic clade is typical of viruses from the realm Duplodnaviria 6 , with multiple components strongly indicating a common ancestry with animal-infecting Herpesvirales . Yet, a substantial fraction of mirusvirus genes, including hallmark transcription machinery genes missing in herpesviruses, are closely related homologues of giant eukaryotic DNA viruses from another viral realm, Varidnaviria . These remarkable chimaeric attributes connecting Mirusviricota to herpesviruses and giant eukaryotic viruses are supported by more than 100 environmental mirusvirus genomes, including a near-complete contiguous genome of 432 kilobases. Moreover, mirusviruses are among the most abundant and active eukaryotic viruses characterized in the sunlit oceans, encoding a diverse array of functions used during the infection of microbial eukaryotes from pole to pole. The prevalence, functional activity, diversification and atypical chimaeric attributes of mirusviruses point to a lasting role of Mirusviricota in the ecology of marine ecosystems and in the evolution of eukaryotic DNA viruses.
69
Basic local alignment search tool
Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Highly accurate protein structure prediction with AlphaFold
John Jumper, Alexander Pritzel, Tim Green et al. · Nature · 2021 · 45.2K citations · Full text