Concepedia

Proteomic, transcriptomic, biochemical, and physio-anatomical analyses provide insights into energy metabolism, light usage, and photosynthesis in cigar tobacco under different light intensities

Xinghua Ma, Xiaochun Ren, Huajun Gao, Xiaoying Wu, Keling Chen, Rayyan Khan

Industrial Crops and Products · 2023 · 19 citations · 81 references

DOI

Concepts

References

81

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

Kenneth J. Livak, Thomas D. Schmittgen · Methods · 2001 · 176.9K citations

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Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 58.3K citations · Full text

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HTSeq—a Python framework to work with high-throughput sequencing data

Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 21.9K citations · Full text

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell, Brian A. Williams, Geo Pertea et al. · Nature Biotechnology · 2010 · 16.1K citations

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim, Geo Pertea, Cole Trapnell et al. · Genome biology · 2013 · 13.4K citations · Full text

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