Journal of Proteome Research · 2022 · 10 citations · 17 references
Life SciencesBiochemistryBioinformaticsMass Spectrometric AnalysisProteomicsProteomics InformaticsMass SpectrometryMass Spectrometry Data AnalysisMass Spectrometry-based ProteomicsData Analysis AlgorithmsGraphical User InterfacesMass Spectral Data AnalysisMass Spectrometry ProteomicsMass Spectrometry-based IdentificationProtein Identification From Tandem Mass SpectrometryTandem Mass SpectrometryTandem Mass Spectrometry Analysis
It has long been known that biological species can be identified from mass spectrometry data alone. Ten years ago, we described a method and software tool, compareMS2, for calculating a distance between sets of tandem mass spectra, as routinely collected in proteomics. This method has seen use in species identification and mixture characterization in food and feed products, as well as other applications. Here, we present the first major update of this software, including a new metric, a graphical user interface and additional functionality. The data have been deposited to ProteomeXchange with dataset identifier PXD034932.
17
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
Koichiro Tamura, Glen Stecher, Daniel S. Peterson et al. · Molecular Biology and Evolution · 2013 · 47.9K citations · Full text