Communications Earth & Environment · 2022 · 57 citations · 56 references
Life SciencesBiotechnologyMicrobiologyEnvironmental BiotechnologyMicrobial EcologyPlant-microbe InteractionsBiodegradationBioremediationOrganic Contaminant RemediationPlant Growth-promoting MicroorganismsPlant Growth-promoting RhizobacteriaRhizosphere InteractionsBiodegradation Of Organic ContaminantsBiodegradation Of Organic PollutantsHydrocarbon DegradationHydrocarbon-degrading BacteriaHydrocarbon-degrading MicrobesHydrocarbon-degrading MicroorganismsPlant-microbe SymbiosisRhizoremediation
Abstract The biotechnological application of microorganisms for rhizoremediation of contaminated sites requires the development of plant-microbe symbionts capable of plant growth promotion and hydrocarbon degradation. Here, we present a study aimed at isolating single microbial strains that are capable of promoting plant growth as well as rhizoremediation of diesel fuel hydrocarbons. Through genomic analyses and greenhouse-based experiments, we examined the synergistic interactions of Medicago sativa L. and Paraburkholderia tropica WTPI1 for enhanced rhizoremediation of diesel fuel-contaminated soils. Plant growth-based experiments confirmed that the inoculation of M. sativa with P. tropica led to a 99% increase in plant biomass. Furthermore, organic geochemical analysis revealed that 96% of all the distinctive diesel fuel hydrocarbons, including C 10 –C 25 n -alkanes, branched alkanes, cycloalkanes and aromatic hydrocarbons were degraded in the M. sativa + P. tropica treatment. These results will prove beneficial for biotechnological application of P. tropica WTPI1 for plant growth promotion and most importantly for environmental remediation of organic pollutants.
56
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
KEGG: Kyoto Encyclopedia of Genes and Genomes
Minoru Kanehisa · Nucleic Acids Research · 2000 · 39.2K citations · Full text
fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen, Yanqing Zhou, Yaru Chen et al. · Bioinformatics · 2018 · 29.7K citations · Full text