Environmental and Experimental Botany · 2022 · 24 citations · 63 references
Life SciencesPlant BiologyPlant SciencesPlant BiochemistryPlant Molecular BiologyPlant PhysiologyPlant MetabolomicsPlant TranscriptomicsSeed PhysiologySeedling Stage Stress ToleranceStress BiochemistryTranscriptomics Of Stress ResponsesAbiotic Stress MetabolomicsBiochemical Stress ResponsesGermination TranscriptomicsMetabolomic Responses To StressPlant Response To Alkaline StressStress-induced Metabolic ResponsesStress-induced MetabolismTranscriptomic Profiles
63
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel · Bioinformatics · 2014 · 69.7K citations · Full text
HTSeq—a Python framework to work with high-throughput sequencing data
Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text
KEGG for linking genomes to life and the environment
Minoru Kanehisa, Michihiro Araki, Susumu Goto et al. · Nucleic Acids Research · 2007 · 7.1K citations · Full text