Scientific Reports · 2022 · 19 citations · 26 references
Life SciencesMarine BiologyMarine SciencesCoral Reef BiologyCoral Reef EcologyStress PhysiologyCoral BleachingCoral PhysiologyCoral Reef ConservationMarine DiagnosticsReef-building Coral BiologyReef-building CoralsBleaching MonitoringCoral DiseasesCoral Reef Condition AssessmentDiagnostic UrinalysisMicroscopic UrinalysisReef Health AssessmentStressTranscriptomic Biomarkers
Coral bleaching, precipitated by the expulsion of the algal symbionts that provide colonies with fixed carbon is a global threat to reef survival. To protect corals from anthropogenic stress, portable tools are needed to detect and diagnose stress syndromes and assess population health prior to extensive bleaching. Here, medical grade Urinalysis strips, used to detect an array of disease markers in humans, were tested on the lab stressed Hawaiian coral species, Montipora capitata (stress resistant) and Pocillopora acuta (stress sensitive), as well as samples from nature that also included Porites compressa. Of the 10 diagnostic reagent tests on these strips, two appear most applicable to corals: ketone and leukocytes. The test strip results from M. capitata were explored using existing transcriptomic data from the same samples and provided evidence of the stress syndromes detected by the strips. We designed a 3D printed smartphone holder and image processing software for field analysis of test strips (TestStripDX) and devised a simple strategy to generate color scores for corals (reflecting extent of bleaching) using a smartphone camera (CoralDX). Our approaches provide field deployable methods, that can be improved in the future (e.g., coral-specific stress test strips) to assess reef health using inexpensive tools and freely available software.
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Spatial and temporal patterns of mass bleaching of corals in the Anthropocene
Terry P. Hughes, Kristen D. Anderson, Sean R. Connolly et al. · Science · 2018 · 2.2K citations · Full text
Monitoring coral bleaching using a colour reference card
Ulrike E. Siebeck, N. Justin Marshall, Anke Kluter et al. · Coral Reefs · 2006 · 430 citations
DGCA: A comprehensive R package for Differential Gene Correlation Analysis
Andrew McKenzie, Igor Katsyv, Won-Min Song et al. · BMC Systems Biology · 2016 · 267 citations · Full text