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PROBER identifies proteins associated with programmable sequence-specific DNA in living cells

Smarajit Mondal, Muthukumar Ramanathan, Weili Miao, Robin M. Meyers, Deepti Rao, Vanessa Lopez-Pajares, Zurab Siprashvili, David L. Reynolds, Douglas F. Porter, Ian Ferguson,

Nature Methods · 2022 · 14 citations · 34 references

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34

limma powers differential expression analyses for RNA-sequencing and microarray studies

Matthew E. Ritchie, Belinda Phipson, Di Wu et al. · Nucleic Acids Research · 2015 · 43K citations · Full text

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Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

Edward Y. Chen, Christopher M. Tan, Yan Kou et al. · BMC Bioinformatics · 2013 · 8.4K citations · Full text

, , +17

A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells

Kyle J. Roux, Dae In Kim, Manfred Raida et al. · The Journal of Cell Biology · 2012 · 2.6K citations · Full text

, , +17

The Encyclopedia of DNA elements (ENCODE): data portal update

Carrie Davis, Benjamin C. Hitz, Cricket A. Sloan et al. · Nucleic Acids Research · 2017 · 2K citations · Full text

, , +17

The CRAPome: a contaminant repository for affinity purification–mass spectrometry data

Dattatreya Mellacheruvu, Zachary Wright, Amber L. Couzens et al. · Nature Methods · 2013 · 1.8K citations · Full text

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