Frontiers in Immunology · 2022 · 49 citations · 143 references
Life SciencesCell BiologyImmunologyGene ExpressionInnate ImmunityTranscriptomicsBulk TranscriptomicsInflammatory Cell ResponsesInflammatory SignalingInnate Immune ActivationSingle-cell Rna Sequencing AnalysisSingle-cell TranscriptomicsAnti-inflammatory ResponseBulk Transcriptome ProfilingImmune Cell TranscriptomicsImmune Response TranscriptomicsMonocyte BiologyMonocyte PhysiologyRna Sequencing (Rna-seq)Single-cell Rna Sequencing
nonclassical monocytes (cM, intM, and ncM, respectively). Here, we present an in-depth analysis of their steady-state bulk- and single-cell transcriptomes, highlighting both pronounced functional specializations and transcriptomic relatedness. Bulk gene transcription indicates pro-inflammatory and antibacterial roles of cM, while ncM and intM appear to be specialized in regulatory/anti-inflammatory functions and tissue repair, as well as antiviral responses and T-cell immunomodulation. Notably, intM stood out by high expression of several genes associated with antigen presentation. Anti-inflammatory and antiviral functions of ncM are further supported by dominant oxidative phosphorylation and selective strong responses to TLR7/8 ligands, respectively. Moreover, single-cell RNA-seq revealed previously unappreciated heterogeneity within cM and proposes intM as a transient differentiation intermediate between cM and ncM.
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R: A Language and Environment for Statistical Computing
R Core Team · 2000 · 353K citations · Full text
Natural Sciences, Computer Science, Statistical Computing +10
Comprehensive Integration of Single-Cell Data
Tim Stuart, Andrew Butler, Paul Hoffman et al. · Cell · 2019 · 16.9K citations · Full text