Computational and Mathematical Methods in Medicine · 2022 · 12 citations · 11 references
MedicineGeneticsOncologyGene ExpressionMetastasisMolecular OncologyCancer BiomarkersCancer TranscriptomicsMolecular Tumor ProfilingNoncoding Rna FunctionNoncoding Rna In CancerNoncoding Rna TranscriptomicsBiomarkersCox RegressionLasso RegressionLong Noncoding Rna BiomarkersNoncoding Rna Biomarker DiscoveryNoncoding Rna Expression ProfilingPrognostic Gene SignaturesPrognostic Rna Biomarkers
Backgrounds: Osteosarcoma (OS) is easy to metastasis. Necroptosis-related long noncoding RNA (lncRNA) (NRlncRNA) plays a vital role in the tumorigenesis of many malignant tumors. Nonetheless, there have been few studies investigating the relations between NRlncRNA and OS. During the investigation, NRlncRNAs in OS were confirmed and characterized and their relationships with prognoses were investigated. Methods: NRlncRNAs were downloaded from The Cancer Genome Atlas (TCGA) OS expression data and clinical-pathological information. First, univariate Cox regression and LASSO regression analyses were used to screen for prognostic-related NRlncRNAs. Second, multivariate regression analyses were used to establish a prognostic nomogram for predicting individual survival probability. Survival analyses demonstrated that high-risk patients (HRPs) had a poor prognosis. In addition, gene set enrichment analyses (GSEA) were used to identify gene function in high- and low-risk groups based on the survival mode. Results: The 7 NRlncRNAs (AC004812.2, AC022915.1, AC073073.2, AC090559.1, AL512330.1, DDN-AS1, and SENCR) were shown to have a distinct difference and were used to construct an NRlncRNA signature. Using the signature as a risk score was an independent factor for OS patients. The signature divided OS patients into the high- and low-risk groups. Furthermore, the seven lncRNAs were significantly enriched in cell migration and metabolism. Conclusions: The 7 NRlncRNA survival models have the potential to serve as therapeutic targets and molecular biomarkers for patients with OS, as well as to precisely predict OS prognoses.
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Stefan Bielack, Beate Kempf‐Bielack, G. Delling et al. · Journal of Clinical Oncology · 2002 · 1.8K citations
A Novel Necroptosis-Related lncRNA Signature Predicts the Prognosis of Lung Adenocarcinoma
Yinliang Lu, Xuehui Luo, Qi Wang et al. · Frontiers in Genetics · 2022 · 70 citations · Full text
Medicine, Cancer Biology, Oncology +17