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Dynamic reprogramming of H3K9me3 at hominoid-specific retrotransposons during human preimplantation development

Hanwen Yu, Manqi Chen, Yuanlang Hu, Songbang Ou, Yu Xiu, Shiqi Liang, Niannian Li, Mingzhu Yang, Xuhui Kong, Chuanbo Sun,

Cell stem cell · 2022 · 88 citations · 124 references

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124

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text

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Fast and accurate short read alignment with Burrows–Wheeler transform

Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text

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Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

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