Microbiology Spectrum · 2022 · 23 citations · 41 references
Life SciencesGeneticsMicrobiologyBacteriologyGenomicsMicrobial GeneticsHorizontal Gene TransferMicrobial PhylogenyMolecular PhylogenyPhylogenetic EpidemiologyPhylogenetic Sequence AnalysisPhylogenetic Tree ReconstructionAcinetobacter Baumannii ResistanceGenetic Mobile ElementsLineage AssignmentMolecular Epidemiology PhylogeneticsPathogen PhylogeneticsPhylogenetic Analysis Of Resistant IsolatesPhylogenetic Comparison Of PathogensPhylogenetic Transmission Analysis
ST208 as one of the most prevalent lineages of CRAB has caused several difficult-to-treat infections and outbreaks around the world. However, few studies have focused on evaluating the genetic background differences of ST208 A. baumannii isolated from very distant geographic regions.
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Prokka: rapid prokaryotic genome annotation
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Roary: rapid large-scale prokaryote pan genome analysis
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Identification of acquired antimicrobial resistance genes
Ea Zankari, Henrik Hasman, Salvatore Cosentino et al. · Journal of Antimicrobial Chemotherapy · 2012 · 5.2K citations · Full text