DNA-PK promotes DNA end resection at DNA double strand breaks in G0 cells

Abstract

DNA double-strand break (DSB) repair by homologous recombination is confined to the S and G₂ phases of the cell cycle partly due to 53BP1 antagonizing DNA end resection in G₁ phase and non-cycling quiescent (G₀) cells where DSBs are predominately repaired by non-homologous end joining (NHEJ). Unexpectedly, we uncovered extensive MRE11- and CtIP-dependent DNA end resection at DSBs in G₀ murine and human cells. A whole genome CRISPR/Cas9 screen revealed the DNA-dependent kinase (DNA-PK) complex as a key factor in promoting DNA end resection in G₀ cells. In agreement, depletion of FBXL12, which promotes ubiquitylation and removal of the KU70/KU80 subunits of DNA-PK from DSBs, promotes even more extensive resection in G₀ cells. In contrast, a requirement for DNA-PK in promoting DNA end resection in proliferating cells at the G₁ or G₂ phase of the cell cycle was not observed. Our findings establish that DNA-PK uniquely promotes DNA end resection in G₀, but not in G₁ or G₂ phase cells, which has important implications for DNA DSB repair in quiescent cells.