Science Advances · 2022 · 29 citations · 46 references
MedicineGeneticsMolecular GeneticsChromatin BiologyEpigeneticsReproductive BiologyChromatinDevelopmental Reproductive PhysiologyEpigenetic ReprogrammingReproductive EpigeneticsSex DeterminationSexual DifferentiationEpigenetic Responses To Temperature ChangeGenome-wide CharacterizationIncubation Temperature EffectsIntron RetentionSex Determination GenesSex Determination GenomicsSex Differentiation In VertebratesTemperature Stress Responses
Sex determination and differentiation in reptiles are complex. In the model species, Pogona vitticeps , high incubation temperature can cause male to female sex reversal. To elucidate the epigenetic mechanisms of thermolabile sex, we used an unbiased genome-wide assessment of intron retention during sex reversal. The previously implicated chromatin modifiers ( jarid2 and kdm6b ) were two of three genes to display sex reversal–specific intron retention. In these species, embryonic intron retention resulting in C-terminally truncated jarid2 and kdm6b isoforms consistently occurs at low temperatures. High-temperature sex reversal is uniquely characterized by a high prevalence of N-terminally truncated isoforms of jarid2 and kdm6b , which are not present at low temperatures, or in two other reptiles with temperature-dependent sex determination. This work verifies that chromatin-modifying genes are involved in highly conserved temperature responses and can also be transcribed into isoforms with new sex-determining roles.
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STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text