mSystems · 2021 · 55 citations · 51 references
Life SciencesInfectious DiseasesMicrobiologyAntimicrobial ResistanceMedical MicrobiologyMolecular EpidemiologyAntibiotic ResistanceBacterial EpidemiologyBacterial InfectionsGenomic EpidemiologyHealthcare-associated InfectionsPhylogenetic EpidemiologyFluoroquinolone AntibioticsGenomic Characterization Of PathogensGenomic Diversity AnalysisGenomic Epidemiology Of ResistancePhylogenetic Analysis Of Resistant IsolatesPhylogenetic Character AnalysisPhylogenetic Diversity AnalysisPhylogenetic Reconstruction
As a developing country, China has an unbalanced health care system due to regional differences in economic development. However, China is also a country worthy of study with regard to the population dynamics of MRSA within the more resource-rich health care systems. In this study, we carried out genomic analysis to investigate the genomic epidemiology and characterization of MRSA isolated from bloodstream infections over a timespan of 6 years. Our refined analysis of different MRSA clones among ST59, ST5, ST239, and ST398 demonstrated the existence of driving factors for the evolution of nosocomial MRSA populations and diversity of the evolutionary events surrounding clonal replacement.
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fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen, Yanqing Zhou, Yaru Chen et al. · Bioinformatics · 2018 · 29.7K citations · Full text
Roary: rapid large-scale prokaryote pan genome analysis
Andrew J. Page, Carla Cummins, Martin Hunt et al. · Bioinformatics · 2015 · 5.9K citations · Full text
PHASTER: a better, faster version of the PHAST phage search tool
David Arndt, Jason R. Grant, Ana Marcu et al. · Nucleic Acids Research · 2016 · 3.8K citations · Full text